DA Creager and AC Simpson. “Empirical analysis and optimization of an NP-hard algorithm using CSP and FDR.” In Proceedings of the Brazilian Symposium on Formal Methods (SBMF 2007). ENTCS, to appear.

SD Indurawa-Fernando, DA Creager, and AC Simpson. “Towards build-time interoperability of workflow definition languages”. In Proceedings of the Symposium on Symbolic and Numeric Algorithms for Scientific Computing (SYNASC 2007). IEEE, September 2007. Timisoara, Romania.

DA Creager. A graph-based approach to the automated discovery of data transformations. D.Phil. thesis, University of Oxford, August 2007.

DA Creager and AC Simpson. “Empirical analysis and optimization of an NP-hard algorithm using CSP and FDR.” In Proceedings of the Brazilian Symposium on Formal Methods (SBMF 2007). SBC, August 2007. Ouro Preto, Brazil.

DA Creager and AC Simpson. “Towards a fully generic theory of data.” In Proceedings of the Int’l Conf. on Formal Engineering Methods (ICFEM 2006). LNCS 4260, pp. 304–323. November 2006. Macau, China.

DA Creager and AC Simpson. “A fully generic, graph-based approach to data transformation discovery.” In Proceedings of Graph Computation Models (GCM 2006), September 2006. Natal, Brazil.

DA Schiffmann, D Dikovskaya, PL Appleton, IP Newton, DA Creager, C Allan, IS Näthke, and IG Goldberg. “Open Microscopy Environment and FindSpots: Integrating image informatics with quantitative multidimensional image analysis.” BioTechniques, 41(2), pp. 199–208, August 2006.

TJ Macura, JN Johnston, DA Creager, PK Sorger, and IG Goldberg. The Open Microscopy Environment Matlab Handler: Combining a bioinformatics data and image repository with a quantitative analysis environment. White paper, OME Consortium, 2006. PDF.

IG Goldberg, C Allan, J-M Burel, D Creager, A Falconi, H Hochheiser, J Johnston, J Mellen, PK Sorger, and JR Swedlow. “The Open Microscopy Environment (OME) data model and XML file: Open tools for informatics and quantitative analysis in biological imaging.” Genome Biology, 6(5), May 2005. HTML.

HS Hochheiser, C Allan, J Burel, D Creager, KW Eliceiri, A Falconi, IG Goldberg, J Johnston, J Mellen, C Rueden, PK Sorger, and JR Swedlow. “The Open Microscopy Environment: Informatics, visualization, and quantitative analysis.” Poster presentation: American Society for Cell Biology (ASCB) 44th Annual Meeting, December 2003. Washington, DC.

DA Creager, E Brauner, J Johnston, BS Hughes, JR Swedlow, IG Goldberg, B Tidor, and PK Sorger. “Extensible, composable, modular management of image analysis tools.” Poster presentation: American Society for Cell Biology (ASCB) 43rd Annual Meeting, December 2003. San Francisco, CA.

IG Goldberg, L David, H Hochheiser, J Johnston, N Orlov, DA Creager, B Hughes, J Mellen, D Rines, C Allan, J Burel, A Falconi, EO Brauner, P Sorger, and JS Swedlow. “OME: Image informatics in a post-genomic world.” Poster presentation: American Society for Cell Biology (ASCB) 43rd Annual Meeting, December 2003. San Francisco, CA.

JR Swedlow, D Creager, J-M Burel, C Allan, A Falconi, D Rines, B Hughes, J Johnston, EO Brauner, PK Sorger, and IG Goldberg. “Semantic types in biological informatics: Applications in live cell imaging using the Open Microscopy Environment.” Poster presentation: American Society for Cell Biology (ASCB) 43rd Annual Meeting, December 2003. San Francisco, CA.

DA Creager. A modular architecture for biological microscope image analysis. M.Eng. thesis, Massachusetts Institute of Technology, February 2003.